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World of Software > Computing > MindEye2: Shared-Subject Models Enable fMRI-To-Image With 1 Hour of Data | HackerNoon
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MindEye2: Shared-Subject Models Enable fMRI-To-Image With 1 Hour of Data | HackerNoon

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Last updated: 2025/04/11 at 7:43 PM
News Room Published 11 April 2025
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Table of Links

Abstract and 1 Introduction

2 MindEye2 and 2.1 Shared-Subject Functional Alignment

2.2 Backbone, Diffusion Prior, & Submodules

2.3 Image Captioning and 2.4 Fine-tuning Stable Diffusion XL for unCLIP

2.5 Model Inference

3 Results and 3.1 fMRI-to-Image Reconstruction

3.2 Image Captioning

3.3 Image/Brain Retrieval and 3.4 Brain Correlation

3.5 Ablations

4 Related Work

5 Conclusion

6 Acknowledgements and References

A Appendix

A.1 Author Contributions

A.2 Additional Dataset Information

A.3 MindEye2 (not pretrained) vs. MindEye1

A.4 Reconstruction Evaluations Across Varying Amounts of Training Data

A.5 Single-Subject Evaluations

A.6 UnCLIP Evaluation

A.7 OpenCLIP BigG to CLIP L Conversion

A.8 COCO Retrieval

A.9 Reconstruction Evaluations: Additional Information

A.10 Pretraining with Less Subjects

A.11 UMAP Dimensionality Reduction

A.12 ROI-Optimized Stimuli

A.13 Human Preference Experiments

3.5 Ablations

Here, we explain where MindEye2 improvements over MindEye1 come from through ablations. MindEye2 outperforms MindEye1 even without pretraining on other subjects (see Appendix A.3), suggesting improvements in model architecture and training procedure. The following ablation results compare models trained from scratch in reduced capacity (1024-dim shared-subject latent space), skipping base SDXL refinement, using 10 sessions of data solely from subject 1.

Table 3: Brain correlation scores calculated in different brain regions including visual cortex, early visual cortical regions V1, V2, V3, and V4, and higher visual areas (set complement of visual cortex and early visual cortex).Table 3: Brain correlation scores calculated in different brain regions including visual cortex, early visual cortical regions V1, V2, V3, and V4, and higher visual areas (set complement of visual cortex and early visual cortex).

Two core differences between MindEye2 and MindEye1 are (1) we used a linear layer, rather than an MLP with dropout, for the initial mapping of voxels to the dimensionality of the residual MLP backbone, and (2) we map to OpenCLIP bigG image latents rather than CLIP L latents. Our ablations show that these changes improve performance across all metrics (Table 4), suggesting that a linear layer with L2 regularization is a more effective means of initially mapping voxels into model space, and that bigG is the richer, more effective CLIP space to map fMRI activity into.

Table 4: Ablations on how MindEye2 (ME2) improves upon MindEye1. "ME1" results replace the initial linear mapping of fMRI voxels with MindEye1’s MLP with dropout. "CLIP L" results map voxels to CLIP L (reconstructions via Versatile Diffusion) instead of OpenCLIP bigG (reconstructions via SDXL unCLIP).Table 4: Ablations on how MindEye2 (ME2) improves upon MindEye1. "ME1" results replace the initial linear mapping of fMRI voxels with MindEye1’s MLP with dropout. "CLIP L" results map voxels to CLIP L (reconstructions via Versatile Diffusion) instead of OpenCLIP bigG (reconstructions via SDXL unCLIP).

Ablations in Table 5 show evaluations from models trained with various combinations of components. Retrieval metrics were worst when MindEye2 was trained with the diffusion prior and low-level submodules removed, and reconstruction metrics were worst when trained with the retrieval submodule and low-level submodule removed. This indicates that training MindEye2 with multiple objectives leads to mutually beneficial results.

Table 5: Ablations compare reconstruction and retrieval metrics for MindEye2 trained with various combinations of model components. Retr.=Retrieval submodule, Low=Low-level submodule.Table 5: Ablations compare reconstruction and retrieval metrics for MindEye2 trained with various combinations of model components. Retr.=Retrieval submodule, Low=Low-level submodule.

Authors:

(1) Paul S. Scotti, Stability AI and Medical AI Research Center (MedARC);

(2) Mihir Tripathy, Medical AI Research Center (MedARC) and a Core contribution;

(3) Cesar Kadir Torrico Villanueva, Medical AI Research Center (MedARC) and a Core contribution;

(4) Reese Kneeland, University of Minnesota and a Core contribution;

(5) Tong Chen, The University of Sydney and Medical AI Research Center (MedARC);

(6) Ashutosh Narang, Medical AI Research Center (MedARC);

(7) Charan Santhirasegaran, Medical AI Research Center (MedARC);

(8) Jonathan Xu, University of Waterloo and Medical AI Research Center (MedARC);

(9) Thomas Naselaris, University of Minnesota;

(10) Kenneth A. Norman, Princeton Neuroscience Institute;

(11) Tanishq Mathew Abraham, Stability AI and Medical AI Research Center (MedARC).

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